Code & Data

Maintained tools for general use

Neuropixels trajectory explorer

A tool for targeting Neuropixels probes, either planning at your desk or performing experiments by interfacing in real-time with manipulators. Available as MATLAB function or standalone (no other software required).

Histology atlas processing

A MATLAB-based pipeline for aligning histology images to the Allen CCF mouse atlas, including marking Neuropixels probe trajectories.

Code and data from papers

Publication data

Data from publications is freely available for download on the Open Science Framework (OSF). Where data is too large or something specific is needed, please contact the lab.

Publication code

Code used for published analysis and figures is freely available for download on GitHub. Where something specific is needed but can't be located, please contact the lab to be pointed to the relevant link.